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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 36642 Da PI: 9.4426 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.7e-08 | 32 | 76 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E +l+ +a + + ++ +W+++a++++ g+t +++ + KHN30676.1 32 KWTPAENKLFENALAVYDKDtpeRWHKVAEMIP-GKTVMDVVKQYK 76 8********************************.***998887775 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.6e-14 | 140 | 184 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r +Rt+ q+ s+ qky KHN30676.1 140 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKY 184 8*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.582 | 28 | 82 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-9 | 29 | 81 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.98E-11 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.02E-8 | 32 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-4 | 32 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 32 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-12 | 132 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.5 | 133 | 189 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-16 | 134 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-17 | 136 | 188 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 137 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.67E-11 | 140 | 185 | No hit | No description |
Pfam | PF00249 | 1.6E-12 | 140 | 184 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MKWEMEILPP ASPYTYNSNW LLDDNRTNNN TKWTPAENKL FENALAVYDK DTPERWHKVA 60 EMIPGKTVMD VVKQYKELEA DVCDIEAGLI SIPGYRSTTT TSPFTLDWVN PAYGDGFKGL 120 TAKRSSSGRP PEQERKKGVP WTEEEHKLFL LGLKKYGKGD WRNISRNYVI TRTPTQVASH 180 AQKYFIRQLS GGKDKRRASI HDITTVNLTE TTRTSSDESK RSTSPQHSTI LSHQQQQQQQ 240 PNSSVTSSGL NLQWSNQPNA GVAMPLNPAH EQVFMSPYGL NSYGFKMHGQ NLHRSSVHES 300 SYLGPQTPNM VFQMLPSQHY SHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 33 | 98 | 11 | 76 | RADIALIS |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538252.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-120 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0B2R846 | 0.0 | A0A0B2R846_GLYSO; Transcription factor MYB1R1 | ||||
STRING | GLYMA11G22960.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-88 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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